Multiple Sclerosis – Experimental Autoimmune Encephalomyelitis EAE Mouse Model

Investigate your compound’s efficacy on the inflammation and immune component of Multiple Sclerosis using the EAE mouse model 

Home » Immunology CRO services » Experimental Autoimmune Encephalomyelitis (EAE) Mouse Model

 EAE Mouse Model Key Characteristics

Experimental autoimmune encephalomyelitis (EAE) mouse model is a relevant preclinical model to study efficacy of novel treatments against multiple sclerosis. The EAE mouse model replicates the key pathological and clinical features of human multiple sclerosis (MS), characterized by autoimmune-induced neuroinflammation, astrogliosis and axonal damage that manifest as motor, sensory, autonomic and cognitive disabilities.  

EAE mouse model is established either by immunization (referred to as active EAE mouse model) or by T-cell transfer from mice immunized for active EAE (referred to as adoptive transfer EAE mouse model). Active EAE mouse model is induced by immunization with antigens such as myelin-oligodendrocyte protein (MOG), myelin basic protein (MBP) or proteolipid protein (PLP) together with Complete Freund’s adjuvant (CFA) accompanied by an intraperitoneal injection of pertussis toxin (PTX) on the day of immunization and two days later. Immunization via active EAE induction can also be set-up in rats. For the adoptive transfer model, donor mice are first immunized with CNS antigen, followed by splenocyte isolation with in vitro re-activation, and the transfer of encephalitogenic T-cells to acceptor mice.  

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✓  Peripheral inflammatory infiltrate (lymphocytes, macrophage) induced CNS inflammation, nerve injury, axon degeneration, and cell death. 

✓  Progressive limb paralysis. 

✓  Complementary PK/PD profiling services. 

EAE mouse model

As a preclinical immunology CRO, InnoSer offers well-established and clinically relevant multiple sclerosis mouse models, complemented with standardized study protocols to ensure consistency and reproducibility of your results. In addition, InnoSer offers research services using the Cuprizone, and Lysolecithin mouse models. While the EAE mouse model allows you to focus on the inflammatory component of MS, the Cuprizone and Lysolecithin models enable you to test the efficacy of compounds directed at remyelination. However, as all models have their unique characteristics, we recommend discussing your study setup in close collaboration with our experts.  

InnoSer’s research network comprises scientific experts working on multiple sclerosis, offering you the possibility to consult your compound’s MOA in-depth.

Example study timeline using MOG-induced EAE mouse model

The MOG (Myelin Oligodendrocyte Glycoprotein)-induced mouse model of Multiple Sclerosis (MS) represents one of the most well-established, chronic models of severe, monophasic, demyelinating encephalomyelitis belonging to the group of direct EAE mouse models induced by immunization. The MOG-induced EAE mouse model offers you with the possibility to perform both prophylactic (largest therapeutic window of all EAE models) and therapeutic studies, being equally suitable both for first-pass compound screen studies and disease efficacy studies.

PKD mouse model timelines

Study timeline example in the MOG-induced EAE mouse model of MS. EAE is induced in 8-10-week-old C57BL/6J female mice by immunization (D0) with subcutaneous (SC) injection of MOG35-55 suspended in complete Freud’s adjuvant (CFA). One to two hours after (D0), mice are injected intraperitoneally (IP) with pertussis toxin (PTX). On D1, 24 hours after the first PTX injection, a second PTX injection is given to all mice again. In the MOG-induced EAE mouse model of MS, the MOG35-55 peptide initiates expansion and differentiation of MOG-specific autoimmune T cells, the PTX will further enhance disease development by modulating immunological response and facilitating the movement of autoimmune T cells into the CNS.  

Prophylactic treatment will start on the day of immunization (D0) and will continue until study termination. Therapeutic treatment starts as each mouse develops EAE (D11-12) and depending on the compound’s characteristics will last until study termination (typically D28), and will include a randomization step to assign mice into groups based on their EAE scores 

Motor function assessment using a rotatord (including –7D to –D3 training sessions, D9, D18, and D28) can be included as an option. Blood collection (D0, D18, and D28) can be included to assess plasma biomarkers (e.g., NfL) or to determine your compound’s PK/PD profile.  

EAE Mouse Model Sample Data

EAE Mouse Model Readouts

Key EAE mouse model readouts that InnoSer offers


Test the efficacy of your treatments in the following battery of translational readouts:

  • Body weight assessment 
  • Daily EAE neurological disease scoring  
  • Spatial memory assessment (e.g., Y maze) 
  • Skeletal muscle strength assessment (e.g., grip strength, wire hang test) 
  • Motor function assessment (Rotarod, compound muscle action potential [CMAP])  
  • Biomarker analysis in plasma (e.g., neurofilament light chain [NfL], inflammatory cytokines) and CSF (e.g., auto-antigens for MOG, MBP, PLP, inflammatory cytokines) 
  • Myelin layer thickness (TEM G-ratio)  
  • Brain histopathology to assess the degree of myelination, peripheral inflammation, microgliosis, astrocyte activation, and/or axonal degeneration  
  • Blood collection for PK/PD profiling  

The People Behind Your Research

Jolien Beekens, PhD

Hasselt University/BIOMED

As part of a joint initiative to advance preclinical MS research, InnoSer works together with researchers from BIOMED, who focus on immunological mechanisms, myelination, and damage processes in the brain during MS. 

Céline Erens, PhD, Immunology Study Director

An expert team led by our immunology study director; Céline Erens works together with you to help you set up optimal study designs. Curating the preclinical testing of your lead compounds with a deep understanding of the field is your solution to accelerating your drug development.

Frequently Asked Questions

What is an EAE model?

The Experimental Autoimmune Encephalomyelitis (EAE) mouse model is a widely used in vivo model for studying the inflammatory and autoimmune pathophysiology of Multiple Sclerosis (MS). EAE mimics key aspects of MS pathology, including demyelination, neuroinflammation, and T-cell mediated autoimmunity. In mice, EAE is induced by immunization with myelin proteins or peptides, which triggers an autoimmune response targeting the central nervous system (CNS), leading to inflammation, demyelination, and neurological deficits similar to those seen in human course of MS.

Key features of the EAE mouse mode include:

  • Pathophysiology: The model mimics the T-cell-mediated autoimmune response that causes demyelination and neuroinflammation in MS.
  • Clinical signs: Symptoms include muscle weakness, paralysis, and gait abnormalities, which are scored to assess the disease progression.

At InnoSer, the EAE mouse model is widely used to evaluate the efficacy of immunomodulatory therapies, anti-inflammatory drugs, and novel therapies for MS treatment. Contact us to learn more about how InnoSer’s expertise using the EAE mouse model of MS can accelerate your preclinical research.

Is EAE a good model for MS?
Yes, the Experimental Autoimmune Encephalomyelitis (EAE) mouse model is widely considered a valuable and effective preclinical model for studying multiple sclerosis (MS). While it does not replicate all aspects of MS, it shares many similarities that make it useful for understanding the disease and testing potential therapies. Key reasons why EAE is a good preclinical research model to test efficacy of therapies for MS include:
  • T-cell-mediated mechanism: EAE involves an autoimmune attack on the central nervous system (CNS) similar to the immune response seen in MS, where T cells target myelin proteins.
  • Demyelination and neuroinflammation: Like MS, EAE results in demyelination, neuroinflammation, and motor dysfunction, which can be used to evaluate the effects of anti-inflammatory and immunomodulatory treatments.
  • Disease progression: EAE allows researchers to observe disease onset, progression, and clinical symptoms (such as paralysis and muscle weakness), providing insights into the mechanisms of MS.

Though EAE does not fully replicate all aspects of MS, particularly the chronic phase of the disease, it remains one of the most commonly used and validated models for MS research and drug development. In addition to the EAE mouse model, InnoSer offers research services using the Cuprizone, and Lysolecithin mouse models. While the EAE mouse model allows you to focus on the inflammatory component of MS, the Cuprizone and Lysolecithin models enable you to test the efficacy of compounds directed at remyelination.

However, as all models have their unique characteristics, we recommend discussing your study setup in close collaboration with our experts.  

Reach out to our experts to discuss which mouse model of MS is the most suitable for your research. 

Is there a difference in EAE onset and disease pattern dependent on the mouse strain you use?
Yes, the onset and disease pattern in the Experimental Autoimmune Encephalomyelitis (EAE) model can vary significantly depending on the mouse strain used. Different strains exhibit distinct immune responses, which can influence the severity and progression of the disease.
  • EAE-susceptible strains (e.g., C57BL/6) typically exhibit a Th1-type phenotype, characterized by the activation of pro-inflammatory T cells. These strains often show a more severe disease course, with faster onset and pronounced symptoms such as motor deficits and paralysis.
  • EAE-resistant strains (e.g., BALB/c) generally have a Th2/Treg phenotype, which is associated with anti-inflammatory responses. These strains tend to exhibit a milder form of EAE, with delayed disease onset and less severe symptoms due to stronger regulatory T cell (Treg) activity and a greater production of anti-inflammatory cytokines.

The choice of mouse strain is crucial as it can influence the disease progression, immune cell response, and overall pathophysiology of the EAE model, making it essential for researchers to select the right strain based on their specific research objectives and the therapeutic mechanisms being studied. Reach out to our team to discuss and obtain guidance on selecting the optimal mouse strain for your EAE study.

Are there specific readouts you recommend?

Selecting the right readouts for your EAE study is essential for assessing the efficacy of your novel immunomodulatory therapeutics. At InnoSer, we recommend a selection of following readouts to use in your EAE studies:

  • Clinical scoring of symptoms such as paralysis, gait abnormalities, and muscle weakness is a critical readout. This helps track disease progression and response to treatment. A commonly used scale is the neurological score to quantify motor function.
  • Motor function tests (e.g., rotarod, grip strength) can be used to quantitatively assess neurological impairment and functional recovery in response to therapeutic interventions.
  • Measuring levels of cytokines (e.g., IFN-γ, TNF-α, IL-6, IL-10) helps you determine the Th1/Th2 balance and the nature of the immune response. Multiplex ELISA, meso-scale discovery (MSD), and/or flow cytometry can be further used for profiling cytokine secretion and immune cell activity in the EAE mouse model.
  • Histopathology analyses performed by in-house veterinary pathologists allow you to assess the degree of inflammation and/or demyelination following treatment with your test compounds. This is essential for understanding the underlying mechanisms and validating the efficacy of your immunomodulatory compounds.

Reach out to our team to decide on the most suitable readout selection, keeping in mind your specific research goals, study timelines, and budgets.

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