Seed and spread Parkinson’s disease mouse models – alpha-synuclein PFF seeding mouse model
Investigate the efficacy of your compound on αlpha-synuclein aggregation, spreading, and dopaminergic neurodegeneration, leveraging InnoSer’s αlpha-synuclein PFF seeding mouse model
Alpha-synuclein PFF Seeding Mouse Models Characteristics
The pathologic spread of misfolded α-synuclein that characterizes human Parkinson’s disease can be recapitulated in rodent brains by stereotaxic injection of α-synuclein preformed fibrils (PFFs). Increasing neuropathological and clinical evidence supports a prion-like mechanism whereby misfolded α-synuclein seeds template the aggregation of endogenous α-synuclein and progressively spread through anatomically connected brain networks, recapitulating the Braak-like progression observed in human synucleinopathies.
InnoSer’s alpha-synuclein pre-formed fibril (PFF) seeding mouse model directly reproduces this mechanism in vivo through stereotaxic injection of sonicated recombinant mouse α-synuclein PFFs (mPFFs) into the dorsal striatum of wild-type C57BL/6J mice. Following injection, these fibrils seed alpha-synuclein aggregation and pathology (pSer129-alpha syn) which develops locally in ipsilateral (IL) striatum and progressively spreads to synoptically connected brain regions, including contralateral (CL) striatum, substantia nigra and amygdala (IL and CL). Importantly, the alpha-synuclein aggregation and spreading is associated to loss of dopaminergic terminals (loss of TH+ areas), and inflammation/ microgliosis (marked by Iba1) in pathology-rich regions.
As part of our collaborations with academic partners, InnoSer has also characterized complementary AAV-α-synuclein overexpression and combined AAV + mPFF mouse models. Additional details and model comparisons are outlined in the FAQs below.
✓ Wild-type C57BL/6J mice injected stereotactically with sonicated recombinant mouse alpha-synuclein pre-formed fibrils (mPFFs)
✓ Unilateral and bilateral injection designs provide you with flexible study designs, depending on your therapeutic hypothesis and endpoint requirements
✓ The alpha-synuclein PFF mouse model develops progressive spreading of alpha-synuclein pathology to other brain regions, including substantia nigra, and associated loss of dopaminergic cells and neuroinflammation
✓ Sacrifice at 5 or up to 13 weeks post-injection enables flexible study timelines
Take advantage of InnoSer’s expertise in modelling α-syn pathology, flexibility, and collaborative approach for your research. Our in-house neurology experts have long-standing experience with modelling α-syn pathology in vivo and are happy to help guide your decision on study design fit for your current research goals.
InnoSer’s neurology expert team possesses relevant experience in working with multiple therapy types ranging from small molecules, peptides, enzymes, oligonucleotides, gene therapy (viral vectors – e.g.. AAVs) and immunotherapies (antibody/vaccine immunotherapies).
The alpha-synuclein PFF seeding mouse model enables mechanism-driven evaluation of therapeutics targeting aggregation, propagation, and neurodegeneration.
This seed-and-spread alpha-synuclein model enables rapid and flexible study designs with experimental timelines ranging from 5 to 13 weeks post-injection, depending on the specific brain regions, pathological stages, and translational endpoints of interest. Both unilateral and bilateral injection paradigms are available, enabling study customization for spreading-focused, aggregation-focused, neuroprotection, or target engagement studies.
Interested in evaluating the efficacy of your aggregation- or spreading-targeted therapeutics in the alpha-synuclein PFF model?
| Readout | Validated phenotype |
|---|---|
| α-synuclein aggregation | α-synuclein accumulation (pSer129+ neurons) at injection site from 5 weeks of age |
| α-synuclein spreading | Robust α-synuclein (pSer129+ neurons) spreading to the contralateral striatum observed at 13 weeks of age |
| Regional distribution | (Semi) Quantifiable α-synuclein pathology across IL and CL brain regions from striatum to substantia nigra, amygdala, and dorsal striatum from 5 weeks of age |
| Loss of dopaminergic neurons | Significant reduction in dopaminergic terminals (TH+ neuron counts) from 5 weeks of age in the dorsal striatum and substantia nigra |
| Neuroinflammation | Microglial activation (Iba1+), with early peak at 5 weeks of age in IL with smaller microglial response observed in CL striatum |
Validation data featuring the alpha-synuclein PFF seeding mouse model

Seeding of alpha-synuclein (pSer129-α-Syn) in IL striatum following injection with mouse PFF
Time course of alpha-synuclein seeding after unilateral injection of pre-formed mouse alpha-synuclein fibrils (mPFF type 1, StressMarq) or PBS into the dorsal striatum. Stereotactic injection was performed at an age of 1.8 months. (A-B) Pathological alpha-synuclein (pSer129-alpha-Syn) were quantified 5, 9 and 13 weeks (control only at 9 weeks) after injection in the striatum as measured by IHC (mean ± SEM, n = 8). Statistics: Tukey’s One-Way ANOVA. Scale bar is 200 µm.

Spreading of alpha-synuclein (pSer129-α-Syn) from IL striatum to CL striatum following injection with mouse PFF
Spreading of alpha-synuclein from ipsilateral (IL) to contralateral (CL) striatum. Pathological alpha-synuclein (pSer129-αSyn) was quantified in contralateral striatum following unilateral injection of pre-formed mouse alpha-synuclein fibrils (mPFF type 1, StressMarq). Data are presented as mean ± SEM (N = 8 per group). Statistical analysis was conducted using One-Way ANOVA followed by Tukey’s multiple comparisons test. P-value summary: * p<0.05, ** p<0.01, *** p<0.001, **** p<0.0001.
Key readouts in the alpha-synuclein PFF seeding mouse model of Parkinson’s disease
The People Behind Your Research

Sofie Carmans, PhD
Principal Scientist Neurology
Leads an expert team of scientists with vast experience in our Neurology models to help you choose the right model and guide your optimal study design. We provide the solution to accelerating your drug development.
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Frequently Asked Questions
What is the difference between unilateral and bilateral mPFF injection, and which should I use?
InnoSer offers both unilateral and bilateral stereotaxic injection of sonicated mPFFs into the dorsal striatum of wild-type C57BL/6J mice, and the choice has a meaningful impact on your study’s pathological signal and statistical design.
Unilateral injection produces ipsilateral pSer129-α-synuclein pathology and enables direct within-animal ipsilateral versus contralateral comparison — the most sensitive design for detecting spreading pathology across hemispheres and into connected brain regions including the substantia nigra and amygdala. InnoSer’s validated dataset (5, 9, and 13 weeks post-injection) is based on unilateral injection and demonstrates progressive spreading from the ipsilateral striatum to the ipsilateral substantia nigra, contralateral striatum, and bilateral amygdala within this window. This design is ideal for spreading mechanism studies, target engagement studies, and programmes where within-animal controls are needed to maximise statistical sensitivity.
Bilateral injection produces a substantially higher aggregate burden and more pronounced dopaminergic terminal loss and TH+ neuron loss in the substantia nigra compared to unilateral injection, generating a stronger pathological signal that is better suited for efficacy studies where the primary endpoint is reduction of pSer129 burden or preservation of dopaminergic integrity, and where the largest detectable treatment effect is needed.
For spreading mechanism studies or target engagement studies where sensitive within-animal comparisons are the priority, unilateral injection is the appropriate design.
Contact our team to discuss which paradigm best fits your endpoint requirements.
What is the difference between using transgenic lines such as the M83 line vs. wild-type mice for alpha synuclein seeding and spreading efficacy studies?
Both models are well-established Parkinson’s disease mouse models for α-synuclein aggregation and spreading studies, but they differ in disease mechanism, kinetics, and translational application.
The M83 hemizygous mice (A53T transgenic mouse model) provide a permissive genetic background that accelerates αlpha-synuclein aggregation following PFF injection. This results in earlier inclusion formation, more widespread pathology, and a faster disease induction timeline. The model is therefore highly suitable for efficacy studies requiring rapid readouts, robust pathology, and reproducible cohorts, particularly in a preclinical neurology CRO setting.
Wild-type C57BL/6J mice injected with PFFs, in contrast, rely entirely on endogenous mouse αlpha-synuclein. This results in slower disease progression and a pathology course that more closely reflects sporadic Parkinson’s disease, which represents the majority of human cases. These models are often preferred for mechanistic studies and translational target engagement assessments, where transgenic overexpression may confound interpretation.
How does this model differ to an AAV alpha-synuclein overexpression mouse model?
The AAV-α-synuclein model and the α-synuclein PFF seeding model represent two complementary but mechanistically distinct Parkinson’s disease mouse models. The AAV-α-synuclein model uses viral vector–mediated overexpression of human alpha-synuclein (typically under a synapsin promoter) in dopaminergic neurons of the substantia nigra. This induces progressive alpha-synuclein accumulation and dopaminergic neuron loss driven primarily by protein overexpression toxicity.
In contrast, the PFF seeding model induces pathology through templated misfolding and propagation of endogenous α-synuclein, closely modelling prion-like spreading mechanisms observed in human Parkinson’s disease.
In collaboration with an academic partner, InnoSer (previously remynd team), has characterised an AAV-α-synuclein overexpression model to support its use in preclinical Parkinson’s disease research. The model consists of stereotactic unilateral injection of an AAV2/7 vector encoding human wild-type α-synuclein under the Synapsin-1 promoter into the substantia nigra of wild-type C57BL/6J mice, with study endpoints typically ranging from 4 to 9 weeks post-injection depending on the experimental design. Together with academic collaborators, the data have demonstrated robust and reproducible α-synuclein pathology in this model across independent experiments. Quantification of pSer129-α-synuclein shows strong aggregation at the injection site, accompanied by significant ipsilateral loss of TH+ dopaminergic terminals, reflecting progressive nigrostriatal degeneration.
Contact our preclinical neurology team to learn whether the is suitable for your research now.
Does the αlpha synuclein PFF model recapitulate motor deficits relevant to Parkinson’s disease?
The alpha-synuclein PFF seeding model does not consistently develop robust or overt motor deficits within standard study timeframes. This reflects the biological nature of the model, which primarily captures progressive alpha-synuclein aggregation, prion-like propagation, regional spread, and associated neuroinflammatory responses.
Importantly, at AD/PD 2026, InnoSer together with academic collaborators presented data on an AAV + mPFF combined alpha-synuclein model, demonstrating that integration of AAV-driven alpha-synuclein expression with PFF seeding results in clear motor deficits alongside robust pathological progression, providing a more translational platform for functional efficacy assessment.
Therefore, if motor function is a key endpoint for your programme, this combined approach may be more appropriate.
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